1. oncoscanR::cntypes
    Accepted types of CN for the segments - 'Gain': 1-2 extra copies - 'Weak amplification': 3-7 extra copies - 'Strong amplification': 8 or more extra copies - 'Heterozygote loss': Loss of one copy out of two - 'Homozygote loss': Loss of all copies - 'LOH': copy-neutral loss of one parental allele
    csv| json| rda| rds
    list
  2. oncoscanR::oncoscan_na33.cov
    GenomicRanges object of the chromosomal arms coverage for the oncoscan assay (based on file extdata/Oncoscan.na33.r2.cov.processed.bed).
    rda| rds
    GRanges
  3. oncoscanR::segs.chas_example
    Expected segments from loading the ChAS file 'chas_example.txt'.
    rda| rds
    GRanges